PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 919990
Common NameARALYDRAFT_919990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 187aa    MW: 21249.3 Da    PI: 5.4552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
919990genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-182069255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
             ykG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  919990 20 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 69
            59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.7872077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-302078IPR001471AP2/ERF domain
SMARTSM003805.5E-392083IPR001471AP2/ERF domain
PRINTSPR003678.6E-92132IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-212178IPR016177DNA-binding domain
PfamPF008476.4E-122169IPR001471AP2/ERF domain
CDDcd000182.12E-262179No hitNo description
PRINTSPR003678.6E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDGGGVADVA VAGTRKRERP YKGIRMRKWG KWVAEIREPN KRSRLWLGSY STPEAAARAY  60
DTAVFYLRGP TARLNFPELL PGEKFSDEDM SAATIRKKAT EVGAQVDALG TAVQNNRHRV  120
FGHNRDSDDD NKNFHRNYQN GEREEEEEDE DDDDKRLKSG GRLLDRVDLN KLPDPESSDE  180
EWESKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-152177663ATERF1
3gcc_A7e-152177663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207420.0AB020742.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21H1.
GenBankBT0257440.0BT025744.1 Arabidopsis thaliana At5g67190 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865019.11e-135hypothetical protein ARALYDRAFT_919990
SwissprotQ9FH941e-120ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLD7MKS31e-135D7MKS3_ARALL; Putative uncharacterized protein
STRINGscaffold_803390.11e-134(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-100DREB and EAR motif protein 2